# DRAGEN Microbial Amplicon

- [DRAGEN Microbial Amplicon App Documentation](/dragen-microbial-amplicon/dragen-microbial-amplicon.md)
- [How to start](/dragen-microbial-amplicon/dragen-microbial-amplicon/start.md)
- [Custom reference](/dragen-microbial-amplicon/dragen-microbial-amplicon/custom.md)
- [Reference FASTA](/dragen-microbial-amplicon/dragen-microbial-amplicon/custom/fasta.md)
- [Reference BED](/dragen-microbial-amplicon/dragen-microbial-amplicon/custom/bed.md)
- [PCR primer definition](/dragen-microbial-amplicon/dragen-microbial-amplicon/custom/pcr-primer-definition.md)
- [Output files](/dragen-microbial-amplicon/dragen-microbial-amplicon/output.md)
- [Understanding the BaseSpace reports](/dragen-microbial-amplicon/dragen-microbial-amplicon/basespace-reports.md)
- [Summary](/dragen-microbial-amplicon/dragen-microbial-amplicon/basespace-reports/summary.md)
- [Sample Report](/dragen-microbial-amplicon/dragen-microbial-amplicon/basespace-reports/sample-report.md)
- [Pipeline Logic](/dragen-microbial-amplicon/dragen-microbial-amplicon/pipeline.md)
- [Special considerations for amplicon detection](/dragen-microbial-amplicon/dragen-microbial-amplicon/amplicon-detection.md)
- [Additional analysis](/dragen-microbial-amplicon/dragen-microbial-amplicon/additional-analysis.md)
- [Frequently asked questions (FAQ)](/dragen-microbial-amplicon/dragen-microbial-amplicon/faq.md)